Assessing sequence comparison methods with the average precision criterion
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چکیده
منابع مشابه
Assessing sequence comparison methods with the average precision criterion
MOTIVATION Comprehensive performance assessment is important for improving sequence database search methods. Sensitivity, selectivity and speed are three major yet usually conflicting evaluation criteria. The average precision (AP) measure aims to combine the sensitivity and selectivity features of a search algorithm. It can be easily visualized and extended to analyze results from a set of que...
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15 صفحه اولAssessing sequence comparison methods with reliable structurally identified distant evolutionary relationships.
Pairwise sequence comparison methods have been assessed using proteins whose relationships are known reliably from their structures and functions, as described in the SCOP database [Murzin, A. G., Brenner, S. E., Hubbard, T. & Chothia C. (1995) J. Mol. Biol. 247, 536-540]. The evaluation tested the programs BLAST [Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). J. Mo...
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چکیده ندارد.
Sequence Comparison - Theory and Methods
Foreword My first thought when I saw a preliminary version of this book was: Too bad there was nothing like this book when I really needed it. Around 20 years ago, I decided it was time to change my research directions. After exploring a number of possibilities, I decided that the area of overlap between molecular biology and computer science (which later came to be called " bioinfor-matics ") ...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2003
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btg349